afni.nimh.nih.gov

Hi Josh,

If the anat/EPI alignment needs help, then lpc+ZZ is a
good cost function to use (lpc is the default). Consider
adding the afni_proc.py options:

-align_opts_aea -cost lpc+ZZ -giant_move

However you said that one run had better registration
than the other. That still meant a volreg problem. Are
the EPI runs more consistently aligned now?

- rick