Hello all,
I have a simple question. I'm running the following afni_proc.py routine:
afni_proc.py -subj_id $subject-$phase-msit -dsets $subject-$phase-MSIT1+orig $subject-$phase-MSIT2+orig -copy_anat $subject-$phase-t1mprage+orig -blocks despike align tlrc volreg mask blur scale regress -move_preproc_files -tcat_remove_first_trs 4 -anat_has_skull yes -volreg_align_e2a -volreg_tlrc_warp -align_opts_aea -giant_move -tlrc_base TT_icbm452+tlrc -blur_size 6 -blur_to_fwhm -mask_apply group -regress_basis 'BLOCK(14,1)' -regress_censor_motion 3.0 -regress_censor_outliers 0.1 -regress_run_clustsim yes -regress_est_blur_epits -regress_est_blur_errts -regress_opts_3dD -bout -fout -num_glt 15 -gltsym 'SYM: +PI -PN' -glt_label 1 PIvsPN -gltsym 'SYM: +PI -PSM' -glt_label 2 PIvsPSM -gltsym 'SYM: +PN -PSM' -glt_label 3 PNvsPSM -gltsym 'SYM: +TI -TN' -glt_label 4 TIvsTN -gltsym 'SYM: +TI -TSM' -glt_label 5 TIvsTSM -gltsym 'SYM: +TN -TSM' -glt_label 6 TNvsTSM -gltsym 'SYM: +BI -BN' -glt_label 7 BIvsBN -gltsym 'SYM: +BI -BSM' -glt_label 8 BIvsBSM -gltsym 'SYM: +BN -BSM' -glt_label 9 BNvsBSM -gltsym 'SYM: +PI +PN +PSM -TI -TN -TSM' -glt_label 10 PainvsTingle -gltsym 'SYM: +PI +PN +PSM -BI -BN -BSM' -glt_label 11 PainvsBaseline -gltsym 'SYM: +TI +TN +TSM -BI -BN -BSM' -glt_label 12 TinglevsBaseline -gltsym 'SYM: +PI +TI +BI -PN -TN -BN' -glt_label 13 InterferencevsNeutral -gltsym 'SYM: +PI +TI +BI -PSM -TSM -BSM' -glt_label 14 InterferencevsSimpleMotor -gltsym 'SYM: +PN +TN +BN -PSM -TSM -BSM' -glt_label 15 NeutralvsSimpleMotor -jobs 4 -regress_reml_exec -regress_stim_labels PI PN PSM TI TN TSM BI BN BSM -regress_stim_times PI12.1D PN12.1D PSM12.1D TI12.1D TN12.1D TSM12.1D BI12.1D BN12.1D BSM12.1D
However, I have some anatomical scans I needed to manually tlrc. What would I need to remove from the script to allow this and will the script recognize the +tlrc anatomical datasets?
I have already run a couple of test modification to no avail and the program tells me I don't have a tlrc dataset when I remove the tlrc block and provide a +tlrc anatomy. What am I doing wrong?
Thanks,
Tim
