AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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pstchan
September 10, 2014 05:41PM
Hi Nick and Dan,

Thanks for your expedite reply.

The anat_fs_al.nii is aligned properly with the following command only after updating AFNI to the latest version.

3dAllineate -1Dmatrix_apply anat_fs_brain_al_mat.aff12.1D -prefix anat_fs_al.nii anat_fs.nii

Both '3drefit -deoblique anat_fs_al.nii' and '3drefit -deoblique anat_fs.nii' do not work.

I recall that I updated the AFNI package in May 23 2014. What are changes in the binaries between the version on May 23 and the latest version so as to make it work?

Thank you so much for your help.

Phoebe.
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Subject Author Posted

NIFTI vs BRIK

pstchan September 10, 2014 01:19AM

Re: NIFTI vs BRIK

nick September 10, 2014 10:13AM

Re: NIFTI vs BRIK

Daniel Glen September 10, 2014 12:05PM

Re: NIFTI vs BRIK

pstchan September 10, 2014 05:41PM

Re: NIFTI vs BRIK

pstchan September 11, 2014 12:43AM

Re: NIFTI vs BRIK

Daniel Glen September 11, 2014 03:58PM