> I am not sure which p-value or any threshold value is appropriate, because the correlation
> map changes with different threshold value (qutorange/manual, p-value, q-value, etc.)
> To show the results of correlation map, I wonder which threshold should be used.
The p-value you see underneath the slider bar is the voxel-wise probability. You can choose any threshold or p-value you feel comfortable with for general visualization. If you want to consider to control for multiple testing errors, use either FDR q-value or FWE corrected value for thrsholding. To obtain the minimum cluster size, run 3dClustSim with a mask and the FWHM values.
> If I apply FDR curve menu, is correlation map affected? When I choose FDR curve, q-value
> appears, but there is no change in the correlation map.
When you threshold the activation patterns with a q-value of, for example, 0.05, there is no change in the correlation map? No change compared to what?
Gang
