AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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lyn
May 06, 2016 01:29PM
Hoping for some assistance. Previously I have used 3dClustSim and 3drefit to create stats needed for displaying cluster-wise alpha levels in the report table for AFNI while viewing group analysis results.

After running the analysis and creating the group anat mask (and averaging the blur estimates) from the afni_proc-generated individual level masks, I then ran:

3dClustSim -mask groupanatmask15+tlrc -fwhmxyz 9.47 10.70 10.41 -niml -prefix mask_6may16

followed by:

3drefit -atrstring AFNI_CLUSTSIM_NN1 file:mask_6may16.NN1_bisided.niml -atrstring AFNI_CLUSTSIM_MASK file:mask_6may16.mask IBEAM_groupSA1mid+tlrc

Is there something else I need to do for the AFNI viewer to allow me to see the updated ClusterSimulation info with cluster-wise alphas displayed in the report table?

Sorry if I missed finding the answer in previous posts
Subject Author Posted

AFNI report table alpha stats from 3dClustSim

lyn May 06, 2016 01:29PM

Re: AFNI report table alpha stats from 3dClustSim

rick reynolds May 10, 2016 03:45PM

Re: AFNI report table alpha stats from 3dClustSim

lyn May 11, 2016 02:14PM

Re: AFNI report table alpha stats from 3dClustSim

Daniel Glen May 11, 2016 03:10PM

Re: AFNI report table alpha stats from 3dClustSim

lyn May 12, 2016 09:45AM