History of AFNI updates  

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October 09, 2014 04:17PM
I noticed that the default warp type for 3dAllineate when using align_epi_anat.py is '-warp aff' (affine / 12 parameters). I was wondering why this default was chosen over other options such as '-warp shr' (rigid-body / 6 parameters)? For instance, are there benefits to using the affine_general warp type since it acts as a sort-of simple field-map correction?

Thanks!
Zarrar
Subject Author Posted

align_epi_anat.py using -warp aff or -warp shr

czarrar October 09, 2014 04:17PM

Re: align_epi_anat.py using -warp aff or -warp shr

rick reynolds October 14, 2014 03:00PM