AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 29, 2014 04:13PM
The ring effects certainly look like they are from motion,
but it is hard to be specific without the time series and
seed locations in hand. You should pick a few subjects
and play with InstaCorr a bit to get a feel for what is
driving the individual results.

1) Extract the seed time series from the errts dataset,
i.e. after all other signals have been regressed out,
and generate the correlations of that with the rest of
the errts dataset. The signal of interest should not be
part of the analysis, you already know what looks like
that.

2) The censor threshold is somewhat group specific. It
might be a guide to try setting it as low as possible
while still leaving plenty of TRs for the correlation.
Some subjects will be dropped when they have too many
censored TRs.

The default in afni_proc.py for healthy adults is 0.3
for task analysis and 0.2 for rest analysis. But for
children, that might have to go closer to 1.0, say.

- rick
Subject Author Posted

Simple correlation analysis

alr4655 October 13, 2014 05:06PM

Re: Simple correlation analysis

gang October 14, 2014 12:19PM

Re: Simple correlation analysis

alr4655 October 14, 2014 12:51PM

Re: Simple correlation analysis

gang October 14, 2014 04:23PM

Re: Simple correlation analysis

alr4655 October 23, 2014 03:12PM

Re: Simple correlation analysis

rick reynolds October 24, 2014 11:04AM

Re: Simple correlation analysis

rick reynolds October 27, 2014 05:24PM

Re: Simple correlation analysis

alr4655 October 28, 2014 03:53PM

Re: Simple correlation analysis

rick reynolds October 29, 2014 04:13PM

Re: Simple correlation analysis

alr4655 November 04, 2014 12:43PM

Re: Simple correlation analysis

gang November 04, 2014 03:47PM

Re: Simple correlation analysis

alr4655 November 05, 2014 11:05AM

Re: Simple correlation analysis

gang November 05, 2014 05:04PM