AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 12, 2014 09:26AM
shanusmagnus,

Thank you kindly for your reply! I will give the BLOCK function a try. However, a more general question, does AFNI need the duration information? If I use a regular "GAM" -- will AFNI be able to infer how long my stimulus is, or will it assume that it is the length of the TR? Or, will it not matter? I looked at the x-matrix and it appeared that the GAM and BLOCK stim durations appear to be identical (ie., in width).

One last question (I hope!): In the past, I've been able to use stim times (in AFNI) with a colon that indicates on and off times, for example, 3.5:7 for a stimulus that starts at 3.5 seconds and ends at 7 seconds. I'm having difficulty do that now... is this still possible? I know there isn't a standard formalism for any of this, but what is the recommended function for dealing with basic event-related experiments? Is it GAM, or would you still suggest the BLOCK function with BLOCK(3,1)?

Thank you very much again!

Cheers,
cephalopod
Subject Author Posted

Stimulus Duration

cephalopod November 07, 2014 10:16AM

Re: Stimulus Duration

shanusmagnus November 08, 2014 03:08PM

Re: Stimulus Duration

cephalopod November 12, 2014 09:26AM

Re: Stimulus Duration

shanusmagnus November 12, 2014 11:02AM

Re: Stimulus Duration

Daniel Glen November 12, 2014 12:36PM

Re: Stimulus Duration

mb November 25, 2014 03:42PM

Re: Stimulus Duration

rick reynolds November 25, 2014 04:06PM

Re: Stimulus Duration

mb November 25, 2014 05:00PM

Re: Stimulus Duration

rick reynolds November 25, 2014 04:12PM