AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 03, 2015 03:36PM
If anyone is willing to help educate a neophyte: from a mathematical perspective, why isn't group-level analysis done in a single step?

As I understand 3dDeconvolve, PSC is modeled in terms of 1) nuisance variables (like head motion, scanner drift, etc calculated on a by-run basis) and 2) regressors for each condition of interest (e.g., a gamma function convolved with stim times). The coefficients associated with (2) can then be put into a group-level analysis where subjects are modeled as a random factor (e.g., in 3dANOVA2).

My question: why aren't subjects modeled as a random effect at the 3dDeconvolve stage? It seems to me that the results would be similar, but that more information would be preserved (as opposed to throwing out all of the within-subject variability, as we do when reducing each subject's data to a single beta parameter).

Thanks in advance to anyone willing to help me think through this.
Subject Author Posted

3dDeconvolve and group-level analysis

efemeri January 03, 2015 03:36PM

Re: 3dDeconvolve and group-level analysis

gang January 05, 2015 10:13AM

Re: 3dDeconvolve and group-level analysis

efemeri January 16, 2015 01:53PM