AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 15, 2016 09:42AM
Hi AFNI experts,

I am attempting to merge Examples 8 (surface) and 11 (resting-state) from the afni_proc.py help to run rs analyses on the surface, but I am getting an error. The error is here:

** -regress_anaticor: not ready for surface analysis
** script creation failure for block 'regress'

Something seems to not be merged properly in my command between the two examples. Any idea what is going on here? My afni_proc.py command is below.

Thanks in advance,
Kara

afni_proc.py -subj_id 2000513 \
-blocks despike ricor tshift align volreg surf blur mask regress \
-copy_anat fs/SUMA/2000513_SurfVol \
-anat_follower_ROI aaseg anat fs/SUMA/aparc.a2009s+aseg_rank.nii \
-anat_follower_ROI aeseg epi fs/SUMA/aparc.a2009s+aseg_rank.nii \
-anat_follower_ROI 2000513vente epi 2000513_vent.nii \
-anat_follower_ROI 2000513WMe epi 2000513_WM.nii \
-anat_follower_erode 2000513vente 2000513WMe \
-dsets func_run1+orig.HEAD \
-surf_anat fs/SUMA/2000513_SurfVol+orig.HEAD \
-surf_spec fs/SUMA/std.141.2000513_lh.spec \
-surf_spec fs/SUMA/std.141.2000513_rh.spec \
-ricor_regs 2000513.slibase.1D \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-blur_size 6 \
-regress_ROI_PC 2000513vente 3 \
-regress_make_corr_vols aeseg 2000513vente \
-regress_ROI 2000513WMe \
-regress_anaticor_fast \
-regress_anaticor_label 2000513WMe \
-regress_censor_motion 0.2 \
-regress_censor_outliers 0.1 \
-regress_apply_mot_types demean deriv \
-regress_est_blur_errts \
-regress_run_clustsim no
Subject Author Posted

resting state analysis on the surface

kblacker August 15, 2016 09:42AM

Re: resting state analysis on the surface

rick reynolds August 17, 2016 09:17AM