AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 04, 2015 03:42PM
I'm working on implementing the method you suggested, as shown below:

#First, we need to extract the ROI time series data from the 3dDeconvolve errts output to a text file.

3dmaskave -mask ../masks/lAmygdala_roi+tlrc. -mrange 33 33 -quiet errts.$subj.tproject+tlrc. > ${subj}_lAmygdala.1D
3dmaskave -mask ../masks/rAmygdala_roi+tlrc. -mrange 34 34 -quiet errts.$subj.tproject+tlrc. > ${subj}_rAmygdala.1D

#Generate correlation map
1ddot -dem ${subj}_lAmygdala.1D ${subj}_rAmygdala.1D > $subj_lAmy_rAmy.1D

I would like you to help me with converting the correlation coefficient to z score (fisher transformation). Thank you.

-Hema
Subject Author Posted

Bandpass filtering and censoring

hemasam January 21, 2015 12:43PM

Re: Bandpass filtering and censoring

rick reynolds January 21, 2015 01:32PM

Re: Bandpass filtering and censoring

hemasam January 23, 2015 01:45PM

Re: Bandpass filtering and censoring

rick reynolds January 26, 2015 02:29PM

Re: Bandpass filtering and censoring

hemasam January 29, 2015 01:34PM

Re: Bandpass filtering and censoring

rick reynolds February 03, 2015 09:52AM

Re: Bandpass filtering and censoring

hemasam February 03, 2015 10:53AM

Re: Bandpass filtering and censoring

rick reynolds February 03, 2015 11:49AM

Re: Bandpass filtering and censoring

hemasam February 03, 2015 01:05PM

Re: Bandpass filtering and censoring

hemasam February 04, 2015 03:42PM

Re: Bandpass filtering and censoring

rick reynolds February 06, 2015 03:10PM

Re: Bandpass filtering and censoring

hemasam February 12, 2015 11:19AM