History of AFNI updates  

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January 22, 2015 10:58AM
I haven't tried the no fink version yet.

Here's the output of afni_system_check.py -check_all

-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 10.8.0
version: Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386
distribution: 10.6.8 i386
number of CPUs: 2
apparent login shell: tcsh

--------------------- AFNI and related program tests ---------------------
which afni : /Users/Alma/abin/afni
afni version : Precompiled binary macosx_10.6_Intel_64: Jan 8 2015
which python : /Library/Frameworks/Python.framework/Versions/2.7/bin/python
python version : 2.7.8
which R :
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/Alma/abin/afni)
R : 0
python : 2
/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
/usr/bin/python

testing ability to start various programs...
afni : success
suma : FAILURE
dyld: Library not loaded: /sw/lib/libglib-1.2.0.dylib
Referenced from: /Users/Alma/abin/suma
Reason: image not found
3dSkullStrip : FAILURE
dyld: Library not loaded: /sw/lib/libglib-1.2.0.dylib
Referenced from: /Users/Alma/abin/3dSkullStrip
Reason: image not found
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : FAILURE
/bin/sh: SurfMesh: command not found

checking for $HOME files...
.afnirc : found
.sumarc : missing
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
---------------------------------------------------------
** python module not found: PyQt4

-> please see the output of "uber_subject.py -help_install"


------------------------------- path vars --------------------------------
PATH = /Library/Frameworks/Python.framework/Versions/2.7/bin:/sw/bin:/sw/sbin:/sw/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/Users/Alma/abin:/usr/X11R6/bin:/Users/Alma/abin:/Users/Alma/abin

PYTHONPATH =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/Data
top history: 21 May 2014 [gangc]: changes to GroupAna_cases tree
data dir : missing suma_demo
atlas : found TT_N27+tlrc under /Users/Alma/abin

------------------------------ OS specific -------------------------------

---------------------------- general comments ----------------------------
* consider running "suma -update_env" for .sumarc
Subject Author Posted

3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 21, 2015 03:24PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Daniel Glen January 21, 2015 04:25PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 21, 2015 04:44PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Daniel Glen January 21, 2015 05:06PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 21, 2015 05:09PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Brian Pittman January 21, 2015 06:03PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 10:25AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

rick reynolds January 22, 2015 10:51AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 10:58AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 11:55AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 12:10PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

rick reynolds January 22, 2015 01:03PM