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January 25, 2015 07:57AM
Dear all,

I have run 3dFriedman to compare differences between processing/motion correction pipelines *; each pipeline has data from the same 8 subjects. The output gives me one brik for Chi-Square values, and another for the pipeline index (p1-p5).
How may I correct for multiple comparisons with the outputted dataset 'new_3dFriedman_FA_negative' ?

Thank you very much,
best wishes,
Barbara


* Example call 3dFriedman
/Users/NEURO-222/afni/3dFriedman -levels 5 -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[0]' -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[1]' -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[2]' -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[3]' -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[4]' -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[5]' -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[6]' -dset 1 'percentage_change_per_mean_FA_p1_skeleton_every_part_negative+tlrc[7]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[0]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[1]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[2]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[3]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[4]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[5]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[6]' -dset 2 'percentage_change_per_mean_FA_p2_skeleton_every_part_negative+tlrc[7]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[0]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[1]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[2]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[3]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[4]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[5]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[6]' -dset 3 'percentage_change_per_mean_FA_p3_skeleton_every_part_negative+tlrc[7]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[0]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[1]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[2]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[3]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[4]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[5]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[6]' -dset 4 'percentage_change_per_mean_FA_p4_skeleton_every_part_negative+tlrc[7]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[0]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[1]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[2]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[3]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[4]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[5]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[6]' -dset 5 'percentage_change_per_mean_FA_p5_skeleton_every_part_negative+tlrc[7]' -out new_3dFriedman_FA_negative



Edited 1 time(s). Last edit at 01/25/2015 07:59AM by barbara.
Subject Author Posted

multiple comparison corrections after 3dFriedman

barbara January 25, 2015 07:57AM

Re: multiple comparison corrections after 3dFriedman

gang January 25, 2015 05:37PM