Hi Paul,
Yes, I am running full probabilistic tractography. So, I should still be able to see the voxels of white matter connecting the basolateral amygdala with the ventromedial prefrontal cortex right?
*Right now, even when I went into Object Controller, selected All Objs and then toggled to NET_000_ROI_001_002+orig and pressed the v under volume rendering, I still just get the same image of the FA image with and the representation of your '-gdset SET' is the yellow sphere+labels+connecting line (the color of the line is the matrix element value being represented).
Even if I don't formally have a tract, I should be able to see the white matter that is connecting these two ROIs correct? Perhaps it is a matter of changing it so that the NET_000_ROI_001_002+orig file is colored so I can see it? I just basically want to do some quality checking and make sure it is connecting my 2 ROIs.
*Then if it looks okay, I can simply use the FA value derived for each individual for my group analysis (I can keep in diffusion space)?
Thanks and sorry again for all of my questions!! I feel that I am so close to having a full analysis path down!
Emily
