AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 02, 2016 05:41PM
Hi, list Experts,

I used AFNI for a while, but now I try to install it to another computer, I meet a lot of problems. Can anyone advise me?

I follow the instruction here: [afni.nimh.nih.gov]

1)Install prerequisite packages.

sudo yum install -y tcsh libXp openmotif gsl xorg-x11-fonts-misc \
PyQt4 R-devel netpbm-progs gnome-tweak-tool ed \
libpng12
sudo yum update -y

The problem go as following.
Loaded plugins: product-id, refresh-packagekit, security, subscription-manager
This system is registered to Red Hat Subscription Management, but is not receiving updates. You can use subscription-manager to assign subscriptions.
Setting up Install Process
No package openmotif available.
No package gsl available.
No package R-devel available.
No package netpbm-progs available.
No package gnome-tweak-tool available.
No package libpng12 available.
Nothing to do
Loaded plugins: product-id, refresh-packagekit, security, subscription-manager
This system is registered to Red Hat Subscription Management, but is not receiving updates. You can use subscription-manager to assign subscriptions.
Setting up Update Process
No Packages marked for Update

2. Set “tcsh” to be the default shell.
chsh -s /usr/bin/tcsh

chsh: "/usr/bin/tcsh" does not exist.

3.Install AFNI.

curl -O [afni.nimh.nih.gov]

tcsh @update.afni.binaries -package linux_openmp_64 -do_extras

This step is fine.

4. reboot
I did this.

5.Get R setup.
tcsh
setenv R_LIBS $HOME/R
mkdir $R_LIBS
echo 'setenv R_LIBS ~/R' >> ~/.cshrc
rPkgsInstall -pkgs ALL

Error appears
rPkgsInstall: Command not found.

6.Automatically set up AFNI/SUMA profiles.
cp $HOME/abin/AFNI.afnirc $HOME/.afnirc
cp: cannot stat `/home/Juanw/abin/AFNI.afnirc': No such file or directory

I do not go further. When I input "afni" in the terminal, it shows
-bash: afni: command not found.

Any good ideas for me?
Subject Author Posted

a silly question on AFNI installation

Juan September 02, 2016 05:41PM

Re: a silly question on AFNI installation

Juan September 05, 2016 01:15AM

Re: a silly question on AFNI installation

rick reynolds September 05, 2016 08:30AM

Re: a silly question on AFNI installation

Juan September 05, 2016 12:09PM

Re: a silly question on AFNI installation

Juan September 05, 2016 02:54PM

Re: a silly question on AFNI installation

rick reynolds September 06, 2016 11:56AM

Re: a silly question on AFNI installation

Juan September 09, 2016 05:15PM