Hello AFNI experts,

I am running single subjects through proc.py with the surface options added (script added below)

most subjects are running through okay, but I am getting this error with a couple of subjects.

Error: SkullStripping failed.

Failed.
** ERROR: failed to open -sv dataset, sub273_SurfVol_Alnd_Exp+orig
** ERROR: failed to open -sv dataset, sub273_SurfVol_Alnd_Exp+orig
-- Error SurfSmooth (SUMA_SurfSmooth.c:1823):
Failed to read dset pb04.sub273.lh.r01.surf.niml.dset
** FATAL ERROR: Can't read input file 'surf.smooth.params.1D'
** Program compile date = Jan 23 2015
params: Subscript out of range.

I have the rest of the output as well if needed. I am just not sure what is going here since the script seems to be running fine for everyone else.

Thanks for the help!
Tara


#
# afni_proc.py -subj_id ${sub} -blocks despike tshift align volreg surf blur \
# regress -copy_anat \
# /media/larson_buffalo/MRI7/KAward/${sub}/${sub}.KAward.spgr+orig.HEAD \
# -dsets \
# /media/larson_buffalo/MRI7/KAward/${sub}/${sub}.KAward.RestPost+orig.HEAD \
# -surf_anat \
# /media/larson_buffalo/MRI7/KAward/${sub}/SUMA/${sub}_SurfVol+orig \
# -surf_spec \
# /media/larson_buffalo/MRI7/KAward/${sub}/SUMA/std.141.${sub}_lh.spec \
# /media/larson_buffalo/MRI7/KAward/${sub}/SUMA/std.141.${sub}_rh.spec \
# -script \
# /media/larson_buffalo/MRI7/KAward/Scripts/LGI_connectivity/proc_${sub}.LGI_connectivity_SUMA \
# -out_dir \
# /media/larson_buffalo/MRI7/KAward/${sub}/${sub}.LGI_connectivity_SUMA \
# -tcat_remove_first_trs 3 -volreg_align_e2a -blur_size 5 -anat_has_skull \
# yes -regress_censor_motion 0.3 -regress_censor_outliers 0.1 \
# -regress_bandpass 0.01 0.1 -regress_apply_mot_types demean deriv