AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 18, 2015 05:58AM
Freesurfer actually contains a copy of 3dvolreg (called 3dvolreg.afni). I've seen this issue resolved in the past by copying (or better yet linking) the AFNI version of the program to the appropriate freesurfer directory. Get the location of the Freesurfer version with:

which 3dvolreg.afni


and replacing that with the file from

which 3dvolreg

If the two commands above both give output, and you were feeling extra shell-happy you can do:

cp `which 3dvolreg` `which 3dvolreg.afni`

If that doesn't seem to fix it, post the output of:

afni_system_check.py -check_all
Subject Author Posted

Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Mareike February 18, 2015 05:46AM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Peter Molfese February 18, 2015 05:58AM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Mareike February 18, 2015 11:16AM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Peter Molfese February 18, 2015 12:22PM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Mareike February 20, 2015 09:08AM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

rick reynolds February 20, 2015 09:21AM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Mareike February 20, 2015 09:39AM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Peter Molfese February 20, 2015 11:56AM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Mareike February 20, 2015 12:44PM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

yarikoptic February 20, 2015 11:58PM

Re: Fatal Signal 11 (SIGSEGV) 3dvolreg.afni

Mareike February 21, 2015 03:06AM