AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 05, 2015 02:11PM
Hi,

We are acquiring DICOM data on a siemens skyra. When I convert the images with the following dimon command:

Dimon -use_last_elem -infile_prefix '*.IMA' -dicom_org -gert_create_dataset

I get the following message:

++ DICOM NOTICE: 7x7 Siemens Mosaic of 43 94x94 images in file
++ 3-4-2015_32CH.MR.BOLD_FMRI_ROUTINE.0008.0002.2015.03.04.16.42.17.508
++ 7
++ 74.12237969.IMA
..........................................
*+ WARNING: Slice-based center is different from mosaic center
*+ WARNING: Origin computation of obliquity may be incorrect
Mosaic Center : -1.27661 -1.27661 0
Slice-based Center: -9999.9 -9999.9 0
++ Command line TR=2.5s ; Images TR=2.5s
-- using Siemens slice timing (43) : 0.000 1.270 0.058 1.328 0.115
1.385
0.175 1.443 0.233 1.500 0.290 1.558 0.348 1.615 0.405 1.673 0.463 1.730
0.520 1.788 0.578 1.845 0.635 1.905 0.693 1.963 0.750 2.020 0.808 2.078
0.865 2.135 0.923 2.193 0.980 2.250 1.040 2.308 1.098 2.365 1.155 2.423
1.213

The images look fine, but I wondered whether I should be worried about this warning.

Thanks a lot!

Harma
Subject Author Posted

Conversion of mosaic format DICOM

Harma March 05, 2015 02:11PM

Re: Conversion of mosaic format DICOM

Daniel Glen March 05, 2015 02:26PM