Thanks for the examples.
Quick questions regarding obliquity:
- When I do dry_run for "align_epi_anat.py -epi2anat...-ex_mode dry_run", I observed that it finds obliquity 'Spacing for anat to oblique epi alignment is 1.234567' and later computes the mat.aff12.1d. However, when I test my epi and anat data using 3dinfo for 'is_oblique' and 'obliquity', it gives 0.
- Also, why the name of matvec for anat->epi has substring 'e2a' as in 'anat_al_e2a_only_mat.aff12.1D'. Shouldn't it be opposite 'a2e'? I am just trying to understand the naming conventions, so I can apply correct transforms.
