AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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maitra
March 26, 2015 06:03PM
Thanks! Here is what I get: 

 afni_system_check.py -check_all

-------------------------------- general ---------------------------------
architecture:         64bit ELF
system:               Linux
release:              3.19.1-201.fc21.x86_64
version:              #1 SMP Wed Mar 18 04:29:24 UTC 2015
distribution:         Fedora 21 Twenty One
number of CPUs:       8
apparent login shell: bash

--------------------- AFNI and related program tests ---------------------
which afni           : /home/maitra/abin/afni
afni version         : Precompiled binary linux_xorg7_64: Mar 23 2015 
which python         : /bin/python
python version       : 2.7.8
which R              : /bin/R
R version            : R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
which tcsh           : /bin/tcsh

instances of various programs found in PATH:
    afni   : 1   (/home/maitra/abin/afni)
    R      : 1   (/usr/bin/R)
    python : 1   (/usr/bin/python2.7)

testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : success
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : success
    SurfMesh             : success

checking for $HOME files...
    .afnirc                   : missing
    .sumarc                   : missing
    .afni/help/all_progs.COMP : missing

------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib64/python2.7/site-packages/PyQt4
++ module loaded: PyQt4

------------------------------- path vars --------------------------------
PATH = /usr/lib64/qt-3.3/bin:/bin:/usr/bin:/usr/local/bin:/usr/local/sbin:/usr/sbin:/home/maitra/.local/bin:/home/maitra/bin:/home/maitra/abin

PYTHONPATH = 
LD_LIBRARY_PATH = 
DYLD_LIBRARY_PATH = 
DYLD_FALLBACK_LIBRARY_PATH = 

------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
atlas    : found TT_N27+tlrc  under /home/maitra/abin

------------------------------ OS specific -------------------------------

---------------------------- general comments ----------------------------
*  consider copying AFNI.afnirc to ~/.afnirc
*  consider running "suma -update_env" for .sumarc
*  consider running "apsearch -update_all_afni_help"

and 

 align_epi_anat.py -version

 #++ align_epi_anat version: 1.50
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Subject Author Posted

align functional data with anatomical data

maitra March 26, 2015 12:43AM

Re: align functional data with anatomical data

rick reynolds March 26, 2015 08:49AM

Re: align functional data with anatomical data

maitra March 26, 2015 04:20PM

Re: align functional data with anatomical data

Peter Molfese March 26, 2015 04:43PM

Re: align functional data with anatomical data

maitra March 26, 2015 05:24PM

Re: align functional data with anatomical data

Peter Molfese March 26, 2015 05:33PM

Re: align functional data with anatomical data

maitra March 26, 2015 06:03PM

Re: align functional data with anatomical data

Daniel Glen March 26, 2015 06:53PM

Re: align functional data with anatomical data

maitra March 26, 2015 07:16PM

Re: align functional data with anatomical data

Daniel Glen March 26, 2015 10:37PM

Re: align functional data with anatomical data

maitra March 27, 2015 12:58AM

Re: align functional data with anatomical data

Daniel Glen March 27, 2015 04:38AM

Re: align functional data with anatomical data

maitra March 27, 2015 09:18AM

Re: align functional data with anatomical data

Daniel Glen March 27, 2015 01:25PM

Re: align functional data with anatomical data

Daniel Glen March 26, 2015 01:58PM