AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
April 28, 2015 12:08PM
Hi--

I have them on my computer as well; the results of that nifti_tool command are: 

bash-3.2$ nifti_tool -disp_hdr -infiles FILE_01.nii |grep -A 10 qform_code
  qform_code           252      1    1
  sform_code           254      1    1
  quatern_b            256      1    0.0
  quatern_c            260      1    0.0
  quatern_d            264      1    0.0
  qoffset_x            268      1    0.0
  qoffset_y            272      1    0.0
  qoffset_z            276      1    0.0
  srow_x               280      4    -0.081938 0.0 -0.996637 140.675537
  srow_y               296      4    0.996637 0.0 -0.081938 -125.838104
  srow_z               312      4    0.0 -1.0 0.0 135.228912
bash-3.2$ nifti_tool -disp_hdr -infiles FILE_02.nii |grep -A 10 qform_code
  qform_code           252      1    1
  sform_code           254      1    1
  quatern_b            256      1    0.0
  quatern_c            260      1    0.0
  quatern_d            264      1    0.0
  qoffset_x            268      1    0.0
  qoffset_y            272      1    0.0
  qoffset_z            276      1    0.0
  srow_x               280      4    -0.081938 0.0 -0.996637 140.675537
  srow_y               296      4    0.996637 0.0 -0.081938 -125.838104
  srow_z               312      4    0.0 -1.0 0.0 135.228912

The do come out looking like they have the same FOV and orientation. In terms of obliquity, there shouldn't be much, as they have been ACPC aligned...

Thanks,
pt
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Subject Author Posted

export brainvoyager VMR and VOI files to NIFTI for AFNI

Lindie du Plessis April 28, 2015 09:39AM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

Daniel Glen April 28, 2015 11:48AM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

ptaylor April 28, 2015 12:08PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

ptaylor April 28, 2015 12:09PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

ptaylor April 28, 2015 12:11PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

Daniel Glen April 28, 2015 01:45PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

ptaylor April 28, 2015 02:22PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

Daniel Glen April 28, 2015 02:29PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

ptaylor April 28, 2015 03:42PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

acollegio July 11, 2017 01:28PM

Re: export brainvoyager VMR and VOI files to NIFTI for AFNI

Daniel Glen July 11, 2017 03:39PM