AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 28, 2015 02:53PM
Hi Daniel,

Just for clarification, first I would use @auto_tlrc and auto_warp py to do an initial affine registration and then non-linear registration of my DTI data to standard space. Then I would use these matrices for 3dNwarp to go back to diffusion space.

*At what point do I put in my ROI to warp to diffusion space? Does this occur at 3dNWarp apply?


@auto_tlrc -base TT_N27+tlrc -input strip_shift+orig. -no_ss \
-init_xform AUTO_CENTER
# nonlinearly align to template
auto_warp.py -skip_affine -base TT_N27+tlrc -input strip_shift+tlrc

Thanks,

Emily
Subject Author Posted

Alignment Issues

Emily April 28, 2015 01:19PM

Re: Alignment Issues

Daniel Glen April 28, 2015 01:38PM

Re: Alignment Issues

Emily April 28, 2015 02:53PM

Re: Alignment Issues

Daniel Glen April 28, 2015 03:03PM

Re: Alignment Issues

Emily April 28, 2015 03:26PM

Re: Alignment Issues

Daniel Glen April 28, 2015 04:55PM

Re: Alignment Issues

Emily April 28, 2015 08:42PM

Re: Alignment Issues

Daniel Glen April 29, 2015 12:26PM

Re: Alignment Issues Attachments

ruyuanzhang November 16, 2018 09:32PM

Re: Alignment Issues

Daniel Glen November 19, 2018 08:03PM

Re: Alignment Issues

ruyuanzhang November 20, 2018 02:03PM

Re: Alignment Issues

Daniel Glen November 20, 2018 04:06PM