AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 15, 2015 09:28AM
Hi Rick,

Thanks for your quick reply. I checked our version of afni and it appears to be the most updated (AFNI_2011_12_21_1014), though if that is incorrect please let me know.

I am pasting below the relevant info from one subject's out.ss_review file. Could you just point me to which would be the average value calculated with censored TRs excluded, or alternatively, if that information is not included here? If the latter is the case then perhaps there is something I accidentally excluded from my script when running my data through it.

motion limit: 0.5
num TRs above mot limit: 20
average motion (per TR): 0.22915
average censored motion: 0.095169
max motion displacement: 6.30854
max censored displacement: 2.73215
outlier limit: 0.1
average outlier frac (TR): 0.036096
num TRs above out limit: 23

Thanks again,
Dominic
Subject Author Posted

censoring output in afni_proc.py

dsf215 May 14, 2015 04:07PM

Re: censoring output in afni_proc.py

rick reynolds May 14, 2015 09:05PM

Re: censoring output in afni_proc.py

dsf215 May 15, 2015 09:28AM

Re: censoring output in afni_proc.py

rick reynolds May 15, 2015 12:33PM

Re: censoring output in afni_proc.py

dsf215 May 15, 2015 01:21PM

Re: censoring output in afni_proc.py

zhenganglu June 15, 2016 03:46PM

Re: censoring output in afni_proc.py

rick reynolds June 15, 2016 04:16PM