afni.nimh.nih.gov

I do run 3dwarp on the structural image and the functional runs in my script. Should I modify this in the script for this person?

Here is the command for the structural image:
3dWarp -deoblique -prefix $output_dir/$subj.mprage $subj.mprage.nii

and for the functional runs:

# tshift
foreach run ( $runs )
3dTshift -tzero 0 -quintic -prefix rm.r$run.tshift pb00.$subj.r$run.tcat+orig
3dWarp -deoblique -prefix pb01.$subj.r$run.tshift rm.r$run.tshift+orig
end