afni.nimh.nih.gov

The warning from 3dAllineate still shows a different file.

Let's just focus on that cat_matvec command. Forget about
redirecting it anywhere. You may have to alter 'sub' here,
but exactly what is the output of the following commands?

cat_matvec -ONELINE sub_T1+tlrc::WARP_DATA -I

cat_matvec -ONELINE sub_T1_al_mat.aff12.1D -I

cat_matvec -ONELINE               \
   sub_T1+tlrc::WARP_DATA -I      \
   sub_T1_al_mat.aff12.1D -I      \
   mat.r01.vr.aff12.1D

- rick