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June 22, 2015 10:56AM
Dear all,

I have surface data in freesurfer surface space and would like to use SurfExtrema to find both local maxima and minima in my surface data.

I tried out the follwoing:

SurfExtrema \
-i_fs .../freesurfer/fsaverage5/surf/lh.orig \
-input .../lh.smoothedtest.mgz \
-extype ABS \
-nbhd_rad 40 \
-prefix .../lh.extrematest \
-table .../lh.extrematest.log


However, the log table is empty for the info header. Does this mean the program didn't run properly or that it ran but did not find any local extrema? I played around with the parameter for nbhd_rad but this didn't make a difference.

Is the command I'm using incorrect or not appropriate for my purpose?


Many thanks in advance!
(and apoligies for cross posting)

Best,
sabine
Subject Author Posted

using SurfExtrema on freesurfer surface data

Sabine June 22, 2015 10:56AM

Re: using SurfExtrema on freesurfer surface data

ziad June 23, 2015 10:29AM