AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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AjaySK
June 22, 2015 03:08PM
Hi Afni experts,
I was interested in warping my subjects to MNI space using the ICBM 2009c nonlinear asymmetric template. In using the "whereamI" function I noticed that the labels are derived from the Collins 27 brain using Eickhoff-Zilles labels which overlay well for the most part. Since the template I am using and the MNIa_caez label file is not exactly the same shape in all regions, I was curious to see if there is an AFNI ICBM label file available (or which would be the closest you recommend to that template of the AFNI options).

Is a better option to use 3dQwarp to warp the MNIa_caez_collins27_T1_18 to the ICBM 2009c template and then apply the transforms to the MNIa_caez_mpm and ml labels to improve the labeling?

Thanks,
Ajay
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ICBM 2009c nonlinear template with AFNI "whereami"

AjaySK June 22, 2015 03:08PM

Re: ICBM 2009c nonlinear template with AFNI "whereami"

Daniel Glen June 24, 2015 02:38AM