AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 24, 2015 02:47PM
Hi Xixi,

Try having FreeSurfer a GIFTI version of the modified annotation file, then load it with SUMA. You should be able to perform the conversion with:
mris_convert -c lh.aparc_parula.a2009s.annot lh.aparc_parula.a2009s.annot.gii

then load the .gii dataset with SUMA much like you were trying with the ill fated output of FSread_annot.

Let me know if that does the trick and if not, which error messages you ended up with.

Also, note that you are better off using option -GIFTI with all of your new @SUMA_Make_Spec_FS commands. See the -help output for details.

cheers
Ziad
Subject Author Posted

FSread_annot problem

Xixi Wang June 24, 2015 09:52AM

Re: FSread_annot problem

ziad June 24, 2015 02:47PM

Re: FSread_annot problem

Xixi Wang June 25, 2015 10:10AM

Re: FSread_annot problem

ziad June 25, 2015 10:52AM

Re: FSread_annot problem

Xixi Wang June 25, 2015 10:55AM

Re: FSread_annot problem

Xixi Wang July 08, 2015 10:47AM