AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 17, 2016 05:28PM
I'm having difficulty figuring out what I'm doing wrong. I'm getting the following output/error:

++ '-stim_times_AM1 1 stimuli/happy.1D' has 1 auxiliary values per time point
++ '-stim_times_AM1 1': basis function model 'dmBLOCK' uses 1 parameters,
    out of the 1 found in timing file 'stimuli/happy.1D'
++ '-stim_times_AM1 2 stimuli/angry.1D' has 1 auxiliary values per time point
++ '-stim_times_AM1 2': basis function model 'dmBLOCK' uses 1 parameters,
    out of the 1 found in timing file 'stimuli/angry.1D'
++ '-stim_times_AM1 3 stimuli/sad.1D' has 1 auxiliary values per time point
++ '-stim_times_AM1 3': basis function model 'dmBLOCK' uses 1 parameters,
    out of the 1 found in timing file 'stimuli/sad.1D'
++ '-stim_times_AM1 4 stimuli/neutral.1D' has 1 auxiliary values per time point
++ '-stim_times_AM1 4': basis function model 'dmBLOCK' uses 1 parameters,
    out of the 1 found in timing file 'stimuli/neutral.1D'
** FATAL ERROR: 3dDeconvolve dies: Use -num_glt option to specify number of GLTs when more than 10

I've tried it with and without the -num_glt option and I get the same error each time, so I'm wondering if the problem might be related to my 1D files instead?

Here is what a sample 1D file contains:

2.994:0.605 17.987:0.6 29.999:0.531 39.001:0.531 41.995:0.604 65.989:0.509 92.993:0.603 95.989:0.631 101.995:0.681 113.991:0.583 125.988:0.584 146.986:0.577 158.999:0.615 168.0:0.591 179.997:0.594 188.998:0.651 194.989:0.636 198.0:0.584 203.989:0.57 215.987:0.578 218.998:0.545 239.996:0.561 248.997:0.605 251.992:0.663 281.992:0.619 302.989:0.627 323.988:0.624 326.999:0.657 338.996:0.652 368.995:0.632 383.987:0.613 386.998:0.588 407.996:0.61 410.991:0.615 419.993:0.58 422.988:0.641 435.001:0.596 449.992:0.684 470.99:0.545 473.986:0.613

I would appreciate any advice!

And you're right about selecting HA[1..4]. I was modifying an older script that used a tent function. Thanks for pointing that out.
Subject Author Posted

variable event durations in 3dDeconvolve

mmontchal July 10, 2015 01:21PM

Re: variable event durations in 3dDeconvolve

gang July 10, 2015 05:50PM

Re: variable event durations in 3dDeconvolve

mmontchal June 13, 2016 03:39PM

Re: variable event durations in 3dDeconvolve

rick reynolds June 15, 2016 09:06AM

Re: variable event durations in 3dDeconvolve

mmontchal June 15, 2016 06:03PM

Re: variable event durations in 3dDeconvolve

rick reynolds June 17, 2016 04:05PM

Re: variable event durations in 3dDeconvolve

mmontchal June 17, 2016 05:28PM

Re: variable event durations in 3dDeconvolve

rick reynolds June 17, 2016 08:39PM

Re: variable event durations in 3dDeconvolve

mmontchal June 20, 2016 03:47PM