AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 24, 2015 11:00AM
Greetings,

I have two questions about how ConvertDset converts surface NIML data to the GIFTI format.

1) When using GIFTI input and using the -o_niml_asc option, the node data (in SPARSE_DATA), is in ASCII format as expected, but the node indices (in INDEX_LIST) are presented as binary. Is this intended behaviour? Is it possible to store the node indices in ASCII format as well?

2) When using NIML input and using the -o_gii_asc option, the GIFTI DataArray elements with node data (equivalent to SPARSE_DATA in NIML) comes first; the last DataArray element contains the node indices (Intent="NIFTI_INTENT_NODE_INDEX"). This seems not according to the GIFTI standard [1], page 19, which reads:

"For storing a subset of node data, a DataArray with intent NIFTI_INTENT_NODE_INDEX may be used. In this case, the data array contains a list of node numbers and it should be the first data array in the file. The remaining data arrays in the file that contain data assigned to nodes must contain the same number of elements as the NIFTI_INTENT_NODE_INDEX array."

It seems that Convertdset's behaviour is not GIFTI-standard compliant. Is that correct, or am I missing something?

Thanks for your consideration, and I look forward to any answers that may enlighten me.

best,
Nick

[1] [www.nitrc.org]
Subject Author Posted

Questions about ConvertDset behaviour for GIFTI and NIML

nick July 24, 2015 11:00AM

Re: Questions about ConvertDset behaviour for GIFTI and NIML

rick reynolds July 24, 2015 01:55PM

Re: Questions about ConvertDset behaviour for GIFTI and NIML

nick July 25, 2015 07:02AM

Re: Questions about ConvertDset behaviour for GIFTI and NIML

rick reynolds July 24, 2015 03:18PM

Re: Questions about ConvertDset behaviour for GIFTI and NIML

nick July 25, 2015 07:02AM