Hi Peter,
Thank you for your response. I tried both the 3dclust and savemask buttons on the gui, and below are what I got. The common problem with both outputs are that -dxyz=1, indicating that it is reading the file as having a resolution of 1x1x1. Our file has a resolution of 3x3x3 instead. How can I have the the file resolution be recognized correctly ? Thanks!
Best,
Marina
++ 3dclust command:
3dclust -1Dformat -nosum -1dindex 1 -1tindex 1 -2thresh -2.924 2.924 -dxyz=1 1.44 33 /local/mridata/True_and_False_Memory/Analyses/Conjunction_CR12FA56_and_CR12HiConfiProportionalHit_17Subjects_3x3_2only_ExclusivelyMasked_wTvalue_Wholebrain+tlrc.HEAD
dmerge -1clust_order 4.3 891 -1tindex 1 -2++ Writing mask dataset ./Clust_mask+tlrc.BRIKand_CR12HiConfiProportionalHit_17Subjects_3x3_2only_Exc + 3dclust -1Dformat -nosum -1dindex 1 -1tindex 1 -2thresh -2.924 2.924 -dxyz=1 -savemask Clust_mask 1.44 33 /local/mridata/True_and_False_Memory/Analyses/Conjunction_CR12FA56_and_CR12HiConfiProportionalHit_17Subjects_3x3_2only_ExclusivelyMasked_wTvalue_Wholebrain+tlrc.HEAD
