AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 05, 2015 02:53PM
Because it looks like your datasets are somewhat far apart to start, consider adding -giant_move, or even -ginormous_move to your command. I personally love the last option both for it being fun to say the word "ginormous" (thanks Daniel) and that it runs the align centers.

The default options assume the epi and anat datasets start off fairly close,
as is normally the case when the epi dataset closely precedes or follows an 
anatomical dataset acquisition. If the two data are acquired over separate
sessions, or accurate coordinate data is not available in the dataset header
(as sometimes occurs for oblique data), various options allow for larger
movement including "-cmass cmass", "-big_move","-giant_move",
"-ginormous_move", and -align_centers yes". Each of these options
is described below. If the datasets do not share the same
coordinate space at all, it may be useful to use the "-ginormous_move", 
"-align_centers" options or run @Align_Centers script first.



Edited 1 time(s). Last edit at 08/05/2015 02:54PM by Peter Molfese.
Subject Author Posted

Problems in 3dAllineate

josuedalboni July 31, 2015 08:03PM

Re: Problems in 3dAllineate

Peter Molfese July 31, 2015 09:29PM

Re: Problems in 3dAllineate

ptaylor August 01, 2015 02:53AM

Re: Problems in 3dAllineate

Daniel Glen August 01, 2015 08:06PM

Re: Problems in 3dAllineate

josuedalboni August 05, 2015 01:09PM

Re: Problems in 3dAllineate

josuedalboni August 05, 2015 01:08PM

Re: Problems in 3dAllineate

Peter Molfese August 05, 2015 02:53PM