afni.nimh.nih.gov

Mmm, the update went through without error, but for some reason I cannot launch afni anymore.

The new binaries were installed in ~/abin, which is still in my PATH, but for the command I tried (e.g. afni or 3dcalc), I get

bash: /home/bass/abin/afni: No such file or directory

Similar thing in tcsh.

The @* commands seem to work fine though.

Tried rebooting, no luck.

Tried rerunning @update.afni.binaries:

bass@ubuntu:/mnt/hgfs/workOnDropbox/projects/150422_decodingHRF/HRphenomenology$ @update.afni.binaries -package linux_xorg7
-- have AFNI binaries under /home/bass/abin
-- install dir: using existing /home/bass/abin
-- attempting to install package linux_xorg7 under
   install dir: /home/bass/abin...
-- have install dir
++ working in new temp dir, .tmp.install
++ getting install prog linux_xorg7/@update.afni.binaries ...
--2015-08-28 08:23:22--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 24198 (24K) [text/plain]
Saving to: ‘@update.afni.binaries’

100%[===============================================================================>] 24,198      --.-K/s   in 0.03s   

2015-08-28 08:23:22 (782 KB/s) - ‘@update.afni.binaries’ saved [24198/24198]

++ using updated @update.afni.binaries, instead...

++ running: tcsh tmp.@update.afni.binaries -no_recur -package linux_xorg7
-- have AFNI binaries under /home/bass/abin
-- install dir: using existing /home/bass/abin
-- attempting to install package linux_xorg7 under
   install dir: /home/bass/abin...
-- have install dir
nuking old temporary directory...
++ working in new temp dir, .tmp.install
-- skipping update of tmp.@update.afni.binaries
++ downloading test file linux_xorg7/afni ...
--2015-08-28 08:23:22--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 12766185 (12M) [text/plain]
Saving to: ‘afni’

100%[===============================================================================>] 12,766,185   797KB/s   in 17s    

2015-08-28 08:23:40 (719 KB/s) - ‘afni’ saved [12766185/12766185]


++ update needed, installing...

++ downloading full linux_xorg7.tgz package...
--2015-08-28 08:23:41--  [afni.nimh.nih.gov]
Resolving afni.nimh.nih.gov (afni.nimh.nih.gov)... 156.40.187.114
Connecting to afni.nimh.nih.gov (afni.nimh.nih.gov)|156.40.187.114|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 782304976 (746M) [application/x-gzip]
Saving to: ‘linux_xorg7.tgz’

100%[===============================================================================>] 782,304,976  829KB/s   in 17m 5s 

2015-08-28 08:40:46 (745 KB/s) - ‘linux_xorg7.tgz’ saved [782304976/782304976]

++ extracting package linux_xorg7...
++ backing up current binaries to auto_backup.linux_xorg7
nuking previous backup directory, auto_backup.linux_xorg7 ...
++ installing new binaries...
++ running apsearch -update_all_afni_help ...
apsearch: Command not found.
done, yay (binaries are under /home/bass/abin)

...finished, removing temp version, tmp.@update.afni.binaries

No change again. Plus I realized that by doing so I removed the backup of the working original version

Any suggestion?

Cheers!
Sébastien