Hi all,
I just met a problem when I run 3dSkullStrip on my mac. This problem might be not specific to 3dSkullStrip, but I was just trying to figure out the reason.
For your reference: I recently updated OSX to EI Capitan (10.11).
1. When I ran @auto_tlrc and other preprocessing steps (e.g., 3dDespike) in a "bash" script (heading with #! /bin/bash), it has error as follow:
Skull Stripping ...
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Users/Qiuhai/abin/3dSkullStrip
Reason: image not found
Trace/BPT trap
Error: Failed to create skull stripped brain
++ 3dTcat: AFNI version=AFNI_2011_12_21_1014 (Sep 25 2015) [64-bit]
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/Qiuhai/abin/3dDespike
Reason: image not found
./rice_pre: line 15: 15128 Trace/BPT trap: 5 3dDespike -nomask -prefix ${sub}_${run}_despike ${sub}_${run}_tcat+orig
2. Then I tried @update.afni.binaries -package macosx_10.7_Intel_64 (I installed afni two years ago under this instruction: [
afni.nimh.nih.gov]). It did updated something. And also I checked the library with typing "mdfind -name libglib-2", and it gives:
/Users/Qiuhai/abin/libglib-2.0.0.dylib
/Users/Qiuhai/abin/libglib-2.0.la
It gives the same directory (~/abin) when I search "libgomp.1.dylib"
3. In my .cshrc file, there was a line "setenv DYLD_FALLBACK_LIBRARY_PATH $HOME/abin". Then I thought it might be due to my bash script. And I changed my script into tcsh with heading #! /bin/tcsh (also reformat the script into c-shell syntactic), and ran it again. Now the "dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib" was gone, but "dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib" was still there.
4. If I ran @auto_tlrc directly in terminal, it gave the same error, but if I ran 3dSkullStrip directly, it works!
So I really don't know why it would be the case. I guess it may have something with EI Capitan update, but not quite be sure. I highly appreciate if you can figure this out. Thanks!
All the best,
Qiuhai
Edited 2 time(s). Last edit at 10/18/2015 11:34PM by qiuhai.
