AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 27, 2015 11:26AM
Thank you!!

BTW, is there any way to blur a mask made by using the TT Daemon? Some of the masks that I made with it are very small and cutting off areas that are still part of the ROIs of the brain. I used the following commands (samples down below).

3dcalc -a TT_Daemon::Brodmann_area_4 -expr 'step(a)' -prefix ba4
3dcalc -a ba4+tlrc. -expr 'step(a*x)' -dicom -prefix ba4_left
3dcalc -a ba4+tlrc. -expr 'step(a)*not(step(x))' -dicom -prefix ba4_right
3dcalc -a TT_Daemon::Brodmann_area_6 -expr 'step(a)' -prefix ba6
3dcalc -a ba6+tlrc. -expr 'step(a*x)' -dicom -prefix ba6_left
3dcalc -a ba6+tlrc. -expr 'step(a)*not(step(x))' -dicom -prefix ba6_right

3dcalc -a ba4_left+tlrc -b ba6_left -expr 'step(a)+2*step(b) -prefix LeftMultiRegion_mask1

3dfractionize -template GroupMCI_mask_group+tlrc -input LeftMultiRegion_mask1+tlrc -prefix LeftMultiRegion_mask1_fr -vote -clip 0.2+tlrc

3dROIstats -nzvoxles -sigma -mask LeftMultiRegion_mask1_fr+tlrc GroupMCI_mask_group+tlrc > BOLD_Group.txt
Subject Author Posted

anatomical measurements with afni

Sabrina October 20, 2015 11:04AM

Re: anatomical measurements with afni

Daniel Glen October 20, 2015 01:42PM

Re: anatomical measurements with afni

Sabrina October 20, 2015 01:53PM

Re: anatomical measurements with afni

Daniel Glen October 20, 2015 04:17PM

Re: anatomical measurements with afni

Sabrina October 27, 2015 09:44AM

Re: anatomical measurements with afni

Daniel Glen October 27, 2015 10:51AM

Re: anatomical measurements with afni

Sabrina October 27, 2015 11:26AM

Re: anatomical measurements with afni

Daniel Glen October 27, 2015 12:10PM

Re: anatomical measurements with afni

Sabrina October 27, 2015 02:35PM

Re: anatomical measurements with afni

Sabrina October 27, 2015 04:24PM

Re: anatomical measurements with afni

Daniel Glen October 27, 2015 05:15PM

Re: anatomical measurements with afni

Sabrina November 02, 2015 10:30AM