AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 21, 2015 09:20AM
I am trying to convert a binary file containing a series of images (intrinsic imaging data) into BRIK format.

using the following code, I get a reasonable image for the first timepoint:
to3d -fim -view orig -prefix test -time:zt 1 75 200 zero -xFOV 10L-R -yFOV 10A-P -zFOV 0S-I 3Ds:8:0:1280:960:75:file
(i.e. the file has 75 images with 1280x960 pixels and 200ms resolution, I dont know the exact FOV but this shouldn't matter, and the first 8 bytes are header information.)


However, with every time step the image shifts to the left by exactly 4 pixels and the right side of the image is folded over to the left:


What could this be?
Subject Author Posted

to3d: images are moving over time

paranoidandroid October 21, 2015 09:20AM

Re: to3d: images are moving over time

rick reynolds October 21, 2015 10:28AM

Re: to3d: images are moving over time

paranoidandroid October 21, 2015 12:36PM

Re: to3d: images are moving over time

rick reynolds October 21, 2015 12:59PM