AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
October 26, 2015 05:01PM
Hi AFNI/Suma users,

I'm trying to project several functional data onto the MNI_N27 cortical surfaces and I want to use a same pbar for all dataset so that I'll be able to compare the value differences between those ROIs directly.

I modified several environment variables: AFNI_PBAR_FULLRANGE, AFNI_PBAR_LOCK, AFNI_RANGE_LOCK, AFNI_THRESH_LOCK. I also set AFNI_PBAR_THREE = YES so that I could custom the colorscale range. I then set the overlay as each ROI and let AFNI talk to SUMA.

Here are the results I got for two subjects: surfaces for two subjects. I modified the pbar sashes manually so that for different subjects, the colorscale ranges are similar. My question is: for data1, the projection results seem reasonable. For data 2, there are lots of red areas on the cortical surfaces, but I can't see any red voxels based on the functional results displayed in AFNI windows. I wonder if I did something wrong here.

I'd really appreciate your time and help!

Thanks,
Xixi
Subject Author Posted

Project different functional data onto cortical surfaces using same colorscale/pbar

Xixi Wang October 26, 2015 05:01PM

Re: Project different functional data onto cortical surfaces using same colorscale/pbar

rick reynolds October 27, 2015 09:24AM

Re: Project different functional data onto cortical surfaces using same colorscale/pbar

Daniel Glen October 27, 2015 11:01AM