AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 17, 2015 12:56PM
Hi Paul,

Yes, I personally prefer using ricor and principle
component tissue regression from eroded ventricles
and white matter to bandpassing. But bandpassing
is still the norm.

There is nothing that guarantees removal of all
high-frequency noise (except zeroing all the data),
including bandpassing. And the power spectrum of a
BOLD-only time series is not all zeros above the
threshold.

The point of inefficiency is that it is does cost
so many degrees of freedom to do bandpassing.
Compare 13 ricor regressors and maybe 4 or 5 for
tissue regressors and ANATICOR with the 46 used
for bandpassing. And 46 is low.

For motion, the empirical means I tend to suggest
is based on the types of subjects one is using.
Basically, use a low threshold that still leaves
sufficient data to process. And then it is easy
to be consistent across studies once it is clear
what seems reasonable.

For "normal" adults (in resting state FMRI), one
might be able to get away with using 0.2. But
particularly since there is usually at least one
group that is more prone to motion, the number
tends to be higher.

- rick
Subject Author Posted

lowpass with bandpass in afni_proc

paul.hamilton November 10, 2015 01:11PM

Re: lowpass with bandpass in afni_proc

rick reynolds November 12, 2015 09:03PM

Re: lowpass with bandpass in afni_proc

paul.hamilton November 13, 2015 08:35AM

Re: lowpass with bandpass in afni_proc

rick reynolds November 17, 2015 12:56PM