Hi Peter,

Thanks for your response!

Here is the output:
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 15.0.0
version: Darwin Kernel Version 15.0.0: Sat Sep 19 15:53:46 PDT 2015; root:xnu-3247.10.11~1/RELEASE_X86_64
distribution: 10.11.1 x86_64
number of CPUs: 8
apparent login shell: bash

--------------------- AFNI and related program tests ---------------------
which afni : /Users/lguo15/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: Sep 14 2015
which python : /usr/bin/python
python version : 2.7.10
which R :
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/lguo15/abin/afni)
R : 0
python : 1 (/usr/bin/python)

testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE
R: Command not found.

checking for $HOME files...
.afnirc : missing
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
---------------------------------------------------------
** python module not found: PyQt4

-> please see the output of "uber_subject.py -help_install"


-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/lguo15/abin

PYTHONPATH = /usr/local/lib/python2.7/site-packages

R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH = /Users/lguo15/abin


------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME
top history: 24 Aug 2015 [rickr]: FT_analysis/s04.cmd.usubj now processes data
data dir : found suma_demo under $HOME
top history: Archive created by @PrepArchives in eomer.nimh.nih.gov : /Users/ziad/SUMA_Class_New/data/SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014
data dir : found FATCAT_DEMO under $HOME/AFNI_demos
top history: Archive created on eomer: /Volumes/Data/ziad/SUMA_test_dirs/FATCAT/FATCAT_DEMO.Distro, Fri Oct 10 18:05:05 EDT 2014
atlas : found TT_N27+tlrc under /Users/lguo15/abin

------------------------------ OS specific -------------------------------

---------------------------- general comments ----------------------------
* consider copying AFNI.afnirc to ~/.afnirc



Edited 1 time(s). Last edit at 11/24/2015 11:50AM by liguo15.