AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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kittyzxu
December 03, 2015 02:06PM
Hi Daniel,

Thank you for your reply. And i did this and it worked!

auto_warp.py -base TT_N27+tlrc. -input subjectdata.nii -skull_strip_input no -warp_dxyz 2 -output_dir subjectdata -affine_input_xmat ID

Just a side note, this is what says on the auto_warp.py manual, and my interpreation of "-skull_strip_input" is "Do not skullstrip input dataset", and by choosing yes, i thought it meant "yes, Do not skullstrip input dataset."

-skull_strip_input
use: Do not skullstrip input dataset
allowed: yes, no
default: no

Thank you again for your help!

Best,
Kitty
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Subject Author Posted

auto_warp failed

kittyzxu December 02, 2015 05:40PM

Re: auto_warp failed

Daniel Glen December 02, 2015 06:00PM

Re: auto_warp failed

kittyzxu December 02, 2015 06:08PM

Re: auto_warp failed

Daniel Glen December 03, 2015 11:33AM

Re: auto_warp failed

kittyzxu December 03, 2015 02:06PM

Re: auto_warp failed

rick reynolds December 03, 2015 09:57PM

Re: auto_warp failed

kittyzxu December 03, 2015 01:48PM

Re: auto_warp failed

kittyzxu December 03, 2015 02:07PM