hi all,
Having installed afni on my new el capitain system I am running into some issues with the dyld libraries not being found. Judging from the afni_checks output below it is looking for the libraries in the wrong place, but I have no clue on how to change that...
Any help is much appreciated!
Cheers,
Richard
-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 15.0.0
version: Darwin Kernel Version 15.0.0: Sat Sep 19 15:53:46 PDT 2015; root:xnu-3247.10.11~1/RELEASE_X86_64
distribution: 10.11.1 x86_64
number of CPUs: 4
apparent login shell: bash
--------------------- AFNI and related program tests ---------------------
which afni : /Users/Richard/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: Nov 16 2015
which python : /usr/bin/python
python version : 2.7.10
which R : /usr/local/bin/R
R version : R version 3.2.2 (2015-08-14) -- "Fire Safety"
which tcsh : /bin/tcsh
instances of various programs found in PATH:
afni : 1 (/Users/Richard/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.2/Resources/bin/R)
python : 2
/usr/bin/python
/anaconda/bin/python2.7
testing ability to start various programs...
afni : success
suma : FAILURE
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Users/Richard/abin/suma
Reason: image not found
3dSkullStrip : FAILURE
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Users/Richard/abin/3dSkullStrip
Reason: image not found
uber_subject.py : success
3dAllineate : FAILURE
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/Richard/abin/3dAllineate
Reason: image not found
3dRSFC : success
SurfMesh : FAILURE
dyld: Library not loaded: /sw/lib/libglib-2.0.0.dylib
Referenced from: /Users/Richard/abin/SurfMesh
Reason: image not found
checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE
oo Warning:
These packages are not installed on the computer: afex!
These packages are not installed on the computer: phia!
These packages are not installed on the computer: snow!
These packages are not installed on the computer: lme4!
These packages are not installed on the computer: paran!
These packages are not installed on the computer: psych!
checking for $HOME files...
.afnirc : missing
.sumarc : missing
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
---------------------------------------------------------
** python module not found: PyQt4
-> please see the output of "uber_subject.py -help_install"
-------------------------------- env vars --------------------------------
PATH = /Applications/MATLAB_R2014b.app/bin:/Users/Richard/abin:/Library/TeX/texbin:/opt/X11/bin:/usr/sbin:/sbin:/usr/bin:/bin:/usr/local/bin:/Applications/freesurfer/mni/bin:/Applications/freesurfer/tktools:/Applications/freesurfer/fsfast/bin:/Applications/freesurfer/bin:/usr/local/fsl/bin:/Applications/freesurfer/bin:/Applications/freesurfer/fsfast/bin:/Applications/freesurfer/tktools:/usr/local/fsl/bin:/Applications/freesurfer/mni/bin://anaconda/bin:/usr/local/fsl/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Library/TeX/texbin
PYTHONPATH =
R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
atlas : found TT_N27+tlrc under /Users/Richard/abin
------------------------------ OS specific -------------------------------
---------------------------- general comments ----------------------------
* consider copying AFNI.afnirc to ~/.afnirc
* consider running "suma -update_env" for .sumarc
