Dear AFNI Experts,
When trying to re-order briks in a existing bucket image, I'm using this command:
3dbucket -fbuc -prefix ${subj}_LS-S_reord ${subj}_LS-S+orig'[1dcat reorder.1D]'
Where "reorder.1D" is a simple text file with 287 entries in a single column. Here's the error message I'm getting:
++ 3dbucket: AFNI version=AFNI_2011_12_21_1014 (Dec 8 2015) [64-bit]
Fatal Signal 11 (SIGSEGV) received
3dbucket main
Bottom of Debug Stack
** AFNI version = AFNI_2011_12_21_1014 Compile date = Dec 8 2015
** [[Precompiled binary linux_openmp_64: Dec 8 2015]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /home/wgraves/.afni.crashlog
And here's the "CRASH LOG":
*********------ CRASH LOG ------------------------------***********
Fatal Signal 11 (SIGSEGV) received
.......... recent internal history .........................................
++++mri_new_7D_generic [4]: {ENTRY (file=mri_new.c line=48) from EDIT_substitute_brick
----mri_new_7D_generic [4]: EXIT} (file=mri_new.c line=140) to EDIT_substitute_brick
++++mri_free [4]: {ENTRY (file=mri_free.c line=49) from EDIT_substitute_brick
mri_free -- call killpurge
+++++mri_killpurge [5]: {ENTRY (file=mri_purger.c line=259) from mri_free
mri_killpurge -- check if im==NULL ptr=0x2a22750
mri_killpurge -- can't killpurge NULL fname!
-----mri_killpurge [5]: EXIT} (file=mri_purger.c line=270) to mri_free
mri_free -- free im
----mri_free [4]: EXIT} (file=mri_free.c line=66) to EDIT_substitute_brick
---EDIT_substitute_brick [3]: EXIT} (file=edt_substbrick.c line=67) to 3dbucket main
+++EDIT_dset_items [3]: {ENTRY (file=edt_dsetitems.c line=125) from 3dbucket main
---EDIT_dset_items [3]: EXIT} (file=edt_dsetitems.c line=964) to 3dbucket main
+++EDIT_dset_items [3]: {ENTRY (file=edt_dsetitems.c line=125) from 3dbucket main
---EDIT_dset_items [3]: EXIT} (file=edt_dsetitems.c line=964) to 3dbucket main
+++EDIT_substitute_brick [3]: {ENTRY (file=edt_substbrick.c line=33) from 3dbucket main
++++mri_new_7D_generic [4]: {ENTRY (file=mri_new.c line=48) from EDIT_substitute_brick
----mri_new_7D_generic [4]: EXIT} (file=mri_new.c line=140) to EDIT_substitute_brick
++++mri_free [4]: {ENTRY (file=mri_free.c line=49) from EDIT_substitute_brick
mri_free -- call killpurge
+++++mri_killpurge [5]: {ENTRY (file=mri_purger.c line=259) from mri_free
mri_killpurge -- check if im==NULL ptr=0x2a22800
mri_killpurge -- can't killpurge NULL fname!
-----mri_killpurge [5]: EXIT} (file=mri_purger.c line=270) to mri_free
mri_free -- free im
----mri_free [4]: EXIT} (file=mri_free.c line=66) to EDIT_substitute_brick
---EDIT_substitute_brick [3]: EXIT} (file=edt_substbrick.c line=67) to 3dbucket main
+++EDIT_dset_items [3]: {ENTRY (file=edt_dsetitems.c line=125) from 3dbucket main
---EDIT_dset_items [3]: EXIT} (file=edt_dsetitems.c line=964) to 3dbucket main
+++EDIT_dset_items [3]: {ENTRY (file=edt_dsetitems.c line=125) from 3dbucket main
---EDIT_dset_items [3]: EXIT} (file=edt_dsetitems.c line=964) to 3dbucket main
............................................................................
3dbucket main
** AFNI compile date = Dec 8 2015
** [[Precompiled binary linux_openmp_64: Dec 8 2015]]
** Program Crash **
Also, when I run the exact same command but using the "-dry" option, it runs as expected.
Thanks in advance for any help you can give with this!
Best,
Will