AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 14, 2015 11:56AM
Hi ptaylor,

So there were some issues with the origin. I used 3dresample to align the two different images, and I also changed the "Template Space" for my file to TT_N27. If I do 3dinfo to the resulting image, and compare it to brain.nii, the only difference I get is the datum type.

I still can't get this tract to open on top of the image though.

Could the problem be within IsoSurface? (I saw that you mentioned 3dIsoSurface but I can't find any documentation on that.) Below is my line of code for IsoSurface:

IsoSurface -input resampled_paths.nii.gz -isoval '-a resampled_paths.nii.gz -expr step(a)' -o_ply ply_paths

Thanks for the help!
Derek Archer
Subject Author Posted

Displaying 3d ROI in SUMA

archerdb December 09, 2015 03:46PM

Re: Displaying 3d ROI in SUMA

ptaylor December 09, 2015 05:22PM

Re: Displaying 3d ROI in SUMA

archerdb December 10, 2015 09:18AM

Re: Displaying 3d ROI in SUMA

ptaylor December 10, 2015 09:37AM

Re: Displaying 3d ROI in SUMA

archerdb December 10, 2015 10:23AM

Re: Displaying 3d ROI in SUMA

ptaylor December 10, 2015 10:50AM

Re: Displaying 3d ROI in SUMA

archerdb December 10, 2015 01:01PM

Re: Displaying 3d ROI in SUMA

ptaylor December 10, 2015 06:15PM

Re: Displaying 3d ROI in SUMA

archerdb December 11, 2015 03:19PM

Re: Displaying 3d ROI in SUMA

ptaylor December 11, 2015 05:08PM

Re: Displaying 3d ROI in SUMA

archerdb December 14, 2015 09:41AM

Re: Displaying 3d ROI in SUMA

ptaylor December 14, 2015 10:42AM

Re: Displaying 3d ROI in SUMA

archerdb December 14, 2015 11:56AM

Re: Displaying 3d ROI in SUMA

ptaylor December 14, 2015 12:35PM

Re: Displaying 3d ROI in SUMA

archerdb December 15, 2015 02:15PM

Re: Displaying 3d ROI in SUMA

ptaylor December 16, 2015 04:13PM

Re: Displaying 3d ROI in SUMA

archerdb December 16, 2015 05:41PM