AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 13, 2016 03:31PM
Hi experts,

I followed the instructions in the AFNI installation, and tried to compiled it, by typing:

$ cd ~/afni_src
$ ls Makefile.macosx*
Makefile.macosx_10.10_icc Makefile.macosx_10.5_G4
Makefile.macosx_10.2 Makefile.macosx_10.5_G5
Makefile.macosx_10.3 Makefile.macosx_10.5_Intel
Makefile.macosx_10.3_G5 Makefile.macosx_10.5_Intel_64
Makefile.macosx_10.3_G5_darwinports Makefile.macosx_10.5_Intel_64icc
Makefile.macosx_10.3_darwinports Makefile.macosx_10.6_Intel_64
Makefile.macosx_10.3_fink Makefile.macosx_10.7_Intel_64
Makefile.macosx_10.4 Makefile.macosx_10.8_gcc
Makefile.macosx_10.4_G5 Makefile.macosx_10.8_icc
Makefile.macosx_10.4_Intel


$ cp Makefile.macosx_10.10_icc Makefile
$ make totality
/bin/rm -f AFNI_version.txt AFNI_version.h
/bin/rm -f `find . -name \*.o -print`
/bin/cp -f niml/niml.h .

...

/bin/rm -f mri_complex_arith.o
icc -O2 -DDARWIN -m64 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -UDONT_USE_MCW_MALLOC -diag-disable 161,3180 -c mri_complex_arith.c -I. -I/usr/local/afniX/include -I/usr/local/include -I/usr/X11R6/include -I/sw/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
In file included from nifti/nifti2/nifti2_io.h(20),
from mrilib.h(81),
from mri_complex_arith.c(7):
nifti/nifti2/nifti2.h(57): warning #732: empty pack alignment stack
#pragma pack(push)
^

/bin/rm -f mri_fft_complex.o
icc -O2 -DDARWIN -m64 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -UDONT_USE_MCW_MALLOC -diag-disable 161,3180 -c mri_fft_complex.c -I. -I/usr/local/afniX/include -I/usr/local/include -I/usr/X11R6/include -I/sw/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
In file included from nifti/nifti2/nifti2_io.h(20),
from mrilib.h(81),
from mri_fft_complex.c(7):
nifti/nifti2/nifti2.h(57): warning #732: empty pack alignment stack
#pragma pack(push)
^

...

In file included from thd_getpathprogs.c(3):
suma_suma.h(20): catastrophic error: cannot open source file "Xm/MainW.h"
#include <Xm/MainW.h>
^

compilation aborted for thd_getpathprogs.c (code 4)
make: *** [thd_getpathprogs.o] Error 4



In the above output, "warning #732: empty pack alignment stack" kept popping up at the bottom of each compilation of code. Am I choosing the correct Makefile? How to fix this error then?

Thank in advance,
Sheng
Subject Author Posted

How to compile AFNI in Mac OS 10.10 Yosemite

youngsaint January 13, 2016 03:31PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

youngsaint January 14, 2016 03:05PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

Peter Molfese January 15, 2016 10:28AM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

youngsaint January 15, 2016 03:54PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

Isaac Schwabacher January 14, 2016 03:10PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

youngsaint January 15, 2016 03:50PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

ptaylor January 15, 2016 05:06PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

youngsaint January 18, 2016 04:08PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

rick reynolds January 18, 2016 04:52PM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

youngsaint January 19, 2016 11:52AM

Re: How to compile AFNI in Mac OS 10.10 Yosemite

rick reynolds January 19, 2016 04:08PM