AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 25, 2016 11:11AM
Hi all,
I've successfully run 3dMVM, but when I try to add the results of 3dClustSim, it doesn't work as it has in the past.

I ran:
3dClustSim -mask intermask.nii.gz -prefix CStemp -niml -fwhm 8

Followed by:
3drefit -atrstring AFNI_CLUSTSIM_NN1_1sided file:CStemp.NN1_1sided.niml -atrstring AFNI_CLUSTSIM_MASK file:CStemp.mask -atrstring AFNI_CLUSTSIM_NN2_1sided file:CStemp.NN2_1sided.niml -atrstring AFNI_CLUSTSIM_NN3_1sided file:CStemp.NN3_1sided.niml -atrstring AFNI_CLUSTSIM_NN1_2sided file:CStemp.NN1_2sided.niml -atrstring AFNI_CLUSTSIM_NN2_2sided file:CStemp.NN2_2sided.niml -atrstring AFNI_CLUSTSIM_NN3_2sided file:CStemp.NN3_2sided.niml -atrstring AFNI_CLUSTSIM_NN1_bisided file:CStemp.NN1_bisided.niml -atrstring AFNI_CLUSTSIM_NN2_bisided file:CStemp.NN2_bisided.niml -atrstring AFNI_CLUSTSIM_NN3_bisided file:CStemp.NN3_bisided.niml allgos_masked_2way.nii.gz

However, in the Clusterize report, I do not see corrected p-values.

Any suggestions would be helpful.
Thanks,
Matt
Subject Author Posted

3dMVM and 3dClustSim

Matthew Hoptman February 25, 2016 11:11AM

Re: 3dMVM and 3dClustSim

Matthew Hoptman February 25, 2016 04:16PM

Re: 3dMVM and 3dClustSim

rick reynolds February 26, 2016 09:33PM