AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
April 07, 2016 03:47PM
The cmass translation should be included. You can work around this by using @Align_Centers beforehand or use align_epi_anat.py with "-align_centers" or "-ginormous_move". For the align_epi_anat.py options, the center alignment would be combined with the anat-epi alignment at the end with a concatenated transformation. The center alignment in this case would be just centers of the grid. For centers of mass, @Align_Centers -cm or 3dCM can be used too.
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Subject Author Posted

3dAllineate -cmass

AjaySK April 06, 2016 12:15AM

Re: 3dAllineate -cmass

ptaylor April 06, 2016 08:56PM

Re: 3dAllineate -cmass

Daniel Glen April 07, 2016 03:47PM