AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

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The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 15, 2016 08:50AM
Dear Gang,

I have a question regarding a set up of glf. I have 3 within-ss variables. First two variables (med and cueType) have 2 levels, and the last variable is Time (TENT) with 5 levels (t0 to t4). I would like set up CueType x Time interaction (including all 5 time points) for each med condition (separately for fixed at D and P condition), but I am bit uncertain how to specify the main effect of Time in the glfCode.. It would be something like setting up contrasts in each time point pairs or 'Time : ' ?

Your help would be greatly appreciated!
Best,
SJ


Below is the set up of my 3dMVM (with the ?? where I was uncertain):

3dMVM -prefix ../ANOVA_results/3dMVM_VvsN_CueRetTENT-0-4TRs_x_CueType_x_med_glf \
-jobs 2 \
-wsVars "med*cueType*Time" \
-mask ../ANOVA_results/mask_group_N=22_fromNative+tlrc. \
-num_glt 8 \
-gltLabel 1 'D-P' -gltCode 1 'med : 1*D -1*P' \
-gltLabel 2 'V-N' -gltCode 2 'cueType : 1*V -1*N' \
-gltLabel 3 'V-N_4s' -gltCode 3 'cueType : 1*V -1*N Time : 1*t2' \
-gltLabel 4 'V-N_6s' -gltCode 4 'cueType : 1*V -1*N Time : 1*t3' \
-gltLabel 5 'V-N_8s' -gltCode 5 'cueType : 1*V -1*N Time : 1*t4' \
-gltLabel 6 'CueType_x_med_4s' -gltCode 6 'cueType : 1*V -1*N med : 1*D -1*P Time : 1*t2' \
-gltLabel 7 'CueType_x_med_6s' -gltCode 7 'cueType : 1*V -1*N med : 1*D -1*P Time : 1*t3' \
-gltLabel 8 'CueType_x_med_8s' -gltCode 8 'cueType : 1*V -1*N med : 1*D -1*P Time : 1*t4' \
-num_glf 2 \
-glfLabel 1 'D_CueType_x_Time' -glfCode 1 'med : 1*D cueType : 1*V -1*N Time : ??' \
-glfLabel 2 'P_CueType_x_Time' -glfCode 2 'med : 1*P cueType : 1*V -1*N Time : ??' \
-dataTable \
Subj med cueType Time InputFile \
Ss1 D V t0 ...



Edited 1 time(s). Last edit at 04/15/2016 12:51PM by sjmich.
Subject Author Posted

3dMVM glfCode question

sjmich April 15, 2016 08:50AM

Re: 3dMVM glfCode question

gang April 15, 2016 04:03PM

Re: 3dMVM glfCode question

sjmich April 17, 2016 06:30AM

Re: 3dMVM glfCode question

gang April 17, 2016 07:47AM

Re: 3dMVM glfCode question

sjmich April 21, 2016 08:43AM