AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 28, 2016 05:22PM
I've been having trouble with 3dgroupincorr results. The mean levels of connectivity are in the range of 3-4, very far off from the expected -0.99 to 0.99. All the individual scans have normal instacorr connectivity maps, so it's not a problem with any scans. Any help clarifying would be appreciated!

The setup input, from cat of the niml file:

<3dGroupInCorr
nvec="902629"
ndset="13"
datum="byte"
nvals="2@546,550,3@546,496,546,2@542,3@546"
fac="0.00102691,0.00128431,0.000898239,0.000926104,0.000946642,0.000980695,0.00125302,0.000506849,0.00086272,0.000839428,0.000530713,0.001106,0.000609429"
geometry="MATRIX(2,0,0,-90,0,-2,0,126,0,0,1.999941,-71.99734):91,109,91"
datafile="passive.grpincorr.data"
dset_labels="01slfunc.nii.gz;02slfunc.nii.gz;03slfunc.nii.gz;04slfunc.nii.gz;05slfunc.nii.gz;06slfunc.nii.gz;07slfunc.nii.gz;08slfunc.nii.gz;09slfunc.nii.gz;10slfunc.nii.gz;11slfunc.nii.gz;13slfunc.nii.gz;14slfunc.nii.gz"
commandline="3dSetupGroupInCorr -prefix passive 01slfunc.nii.gz 02slfunc.nii.gz 03slfunc.nii.gz 04slfunc.nii.gz 05slfunc.nii.gz 06slfunc.nii.gz 07slfunc.nii.gz 08slfunc.nii.gz 09slfunc.nii.gz 10slfunc.nii.gz 11slfunc.nii.gz 13slfunc.nii.gz 14slfunc.nii.gz"
prep="normalize" />
Subject Author Posted

3dgroupincorr

kwarren April 28, 2016 05:22PM

Re: 3dgroupincorr

Bob Cox April 29, 2016 06:23AM

Re: 3dgroupincorr

kwarren April 29, 2016 11:56AM

Re: 3dgroupincorr

Bob Cox April 29, 2016 01:11PM

Re: 3dgroupincorr

Bob Cox April 29, 2016 08:54PM

Re: 3dgroupincorr

kwarren May 05, 2016 03:11PM