AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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daisyburr
January 29, 2018 08:20PM
Hi,

I am trying to convert my raw data using the dimon conversion package, which I have never had issues with in the past.

Both
Dimon -infile_pattern '005*/*.dcm' -gert_create_dataset -gert_write_as_nifti
(from outside the anatomical folder)
and
Dimon -infile_prefix 000 -dicom_org -gert_create_dataset
(inside the anatomical folder)
produce this error:
++ writing dimon file list to dimon.files.run.005
sh: ./GERT_Reco_dicom_005: Permission denied

They both output:
dimon.files.run.005
GERT_Reco_dicom_005

but fail to output the brik and head files (and nifti files in the first example).

Am I doing something wrong? Thanks!



Edited 1 time(s). Last edit at 01/29/2018 08:21PM by daisyburr.
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Subject Author Posted

Dimon conversion error

daisyburr January 29, 2018 08:20PM

Re: Dimon conversion error

rick reynolds January 29, 2018 10:05PM

Re: Dimon conversion error

daisyburr January 30, 2018 08:46AM

Re: Dimon conversion error

rick reynolds January 30, 2018 09:01AM

Re: Dimon conversion error

daisyburr January 30, 2018 09:17AM

Re: Dimon conversion error

rick reynolds January 30, 2018 09:31AM