Hello AFNI experts,
I am getting an error when I try and use the MNI152 template. Here is my proc.py script but for some reason it won't register the template. Pathways are all correct, permissions are fine and proc.py does not crash, just says it will use the default.
**failed to find tlrc_base 'MNI152_T1_1mm.nii
afni_proc.py \
-subj_id ${subject} \
-script ${singlesubscripts}/proc_${subject}.acq \
-out_dir ${subfolder}/${subject}/acq_results_Qwarp \
-scr_overwrite \
-dsets ${subfolder}/${subject}/${subject}.iStar.acq+orig \
-copy_anat ${subfolder}/${subject}/${subject}.iStar.spgr+orig \
-anat_has_skull yes \
-tlrc_base MNI152_T1_1mm.nii \
-do_block align tlrc \
-tcat_remove_first_trs 3 \
-volreg_align_to third \
-volreg_align_e2a \
-volreg_tlrc_warp \
-tlrc_NL_warp \
-blur_size 4 \
-regress_stim_times \
${subfolder}/conditioning_time/CSplusUE4.ACQ.1D \
${subfolder}/conditioning_time/CSminus4.ACQ.1D \
-regress_stim_labels CSplusACQ CSminusACQ \
-regress_basis 'GAM' \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.1 \
-regress_opts_3dD \
-gltsym 'SYM: +CSplusACQ -CSminusACQ' -glt_label 1 CSplusACQvsCSminusACQ \
-jobs 6 \
-regress_est_blur_epits \
-regress_est_blur_errts \
-no_epi_review
tcsh -xef ${singlesubscripts}/proc_${subject}.acq |& tee ${singlesubscripts}/output.proc_${subject}.acq \
end