AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 16, 2016 03:55PM
Hello AFNI experts,

I am getting an error when I try and use the MNI152 template. Here is my proc.py script but for some reason it won't register the template. Pathways are all correct, permissions are fine and proc.py does not crash, just says it will use the default.

**failed to find tlrc_base 'MNI152_T1_1mm.nii

afni_proc.py \
-subj_id ${subject} \
-script ${singlesubscripts}/proc_${subject}.acq \
-out_dir ${subfolder}/${subject}/acq_results_Qwarp \
-scr_overwrite \
-dsets ${subfolder}/${subject}/${subject}.iStar.acq+orig \
-copy_anat ${subfolder}/${subject}/${subject}.iStar.spgr+orig \
-anat_has_skull yes \
-tlrc_base MNI152_T1_1mm.nii \
-do_block align tlrc \
-tcat_remove_first_trs 3 \
-volreg_align_to third \
-volreg_align_e2a \
-volreg_tlrc_warp \
-tlrc_NL_warp \
-blur_size 4 \
-regress_stim_times \
${subfolder}/conditioning_time/CSplusUE4.ACQ.1D \
${subfolder}/conditioning_time/CSminus4.ACQ.1D \
-regress_stim_labels CSplusACQ CSminusACQ \
-regress_basis 'GAM' \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.1 \
-regress_opts_3dD \
-gltsym 'SYM: +CSplusACQ -CSminusACQ' -glt_label 1 CSplusACQvsCSminusACQ \
-jobs 6 \
-regress_est_blur_epits \
-regress_est_blur_errts \
-no_epi_review

tcsh -xef ${singlesubscripts}/proc_${subject}.acq |& tee ${singlesubscripts}/output.proc_${subject}.acq \

end
Subject Author Posted

failed to find tlrc_base

tamiskovich June 16, 2016 03:55PM

Re: failed to find tlrc_base

tamiskovich June 16, 2016 04:05PM